Exception while try to configure a NetCDF file (example attached)

Description

When I try to add new layer from NetCDF store file I got exception.
Layer name: Significant_height_of_combined_wind_waves_and_swell_surface

Layers -> Add a new resource -> Add layer from file -> Publish

java.lang.RuntimeException: Error occurred while building the resources for the configuration page
at org.geoserver.web.data.layer.NewLayerPage.buildLayerInfo(NewLayerPage.java:329)
at org.geoserver.web.data.layer.NewLayerPage$7.onClick(NewLayerPage.java:260)
at org.geoserver.web.wicket.SimpleAjaxLink$1.onClick(SimpleAjaxLink.java:45)
at org.apache.wicket.ajax.markup.html.AjaxLink$1.onEvent(AjaxLink.java:68)
at org.apache.wicket.ajax.AjaxEventBehavior.respond(AjaxEventBehavior.java:177)
at org.apache.wicket.ajax.AbstractDefaultAjaxBehavior.onRequest(AbstractDefaultAjaxBehavior.java:300)
at org.apache.wicket.request.target.component.listener.BehaviorRequestTarget.processEvents(BehaviorRequestTarget.java:119)
at org.apache.wicket.request.AbstractRequestCycleProcessor.processEvents(AbstractRequestCycleProcessor.java:92)
at org.apache.wicket.RequestCycle.processEventsAndRespond(RequestCycle.java:1250)
at org.apache.wicket.RequestCycle.step(RequestCycle.java:1329)
at org.apache.wicket.RequestCycle.steps(RequestCycle.java:1436)
at org.apache.wicket.RequestCycle.request(RequestCycle.java:545)
at org.apache.wicket.protocol.http.WicketFilter.doGet(WicketFilter.java:484)
at org.apache.wicket.protocol.http.WicketServlet.doGet(WicketServlet.java:138)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:620)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:727)
at org.springframework.web.servlet.mvc.ServletWrappingController.handleRequestInternal(ServletWrappingController.java:159)
at org.springframework.web.servlet.mvc.AbstractController.handleRequest(AbstractController.java:153)
at org.springframework.web.servlet.mvc.SimpleControllerHandlerAdapter.handle(SimpleControllerHandlerAdapter.java:48)
at org.springframework.web.servlet.DispatcherServlet.doDispatch(DispatcherServlet.java:923)
at org.springframework.web.servlet.DispatcherServlet.doService(DispatcherServlet.java:852)
at org.springframework.web.servlet.FrameworkServlet.processRequest(FrameworkServlet.java:882)
at org.springframework.web.servlet.FrameworkServlet.doGet(FrameworkServlet.java:778)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:620)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:727)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:303)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208)
at org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:52)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:241)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208)
at org.geoserver.filters.ThreadLocalsCleanupFilter.doFilter(ThreadLocalsCleanupFilter.java:27)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:241)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208)
at org.geoserver.filters.SpringDelegatingFilter$Chain.doFilter(SpringDelegatingFilter.java:74)
at org.geoserver.wms.animate.AnimatorFilter.doFilter(AnimatorFilter.java:70)
at org.geoserver.filters.SpringDelegatingFilter$Chain.doFilter(SpringDelegatingFilter.java:70)
at org.geoserver.filters.SpringDelegatingFilter.doFilter(SpringDelegatingFilter.java:45)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:241)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208)
at org.geoserver.platform.AdvancedDispatchFilter.doFilter(AdvancedDispatchFilter.java:49)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:241)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208)
at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:311)
at org.geoserver.security.filter.GeoServerCompositeFilter$NestedFilterChain.doFilter(GeoServerCompositeFilter.java:68)
at org.springframework.security.web.access.intercept.FilterSecurityInterceptor.invoke(FilterSecurityInterceptor.java:116)
at org.springframework.security.web.access.intercept.FilterSecurityInterceptor.doFilter(FilterSecurityInterceptor.java:83)
at org.geoserver.security.filter.GeoServerCompositeFilter$NestedFilterChain.doFilter(GeoServerCompositeFilter.java:72)
at org.geoserver.security.filter.GeoServerCompositeFilter.doFilter(GeoServerCompositeFilter.java:91)
at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:323)
at org.geoserver.security.filter.GeoServerCompositeFilter$NestedFilterChain.doFilter(GeoServerCompositeFilter.java:68)
at org.springframework.security.web.access.ExceptionTranslationFilter.doFilter(ExceptionTranslationFilter.java:113)
at org.geoserver.security.filter.GeoServerCompositeFilter$NestedFilterChain.doFilter(GeoServerCompositeFilter.java:72)
at org.geoserver.security.filter.GeoServerCompositeFilter.doFilter(GeoServerCompositeFilter.java:91)
at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:323)
at org.geoserver.security.filter.GeoServerAnonymousAuthenticationFilter.doFilter(GeoServerAnonymousAuthenticationFilter.java:53)
at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:323)
at org.geoserver.security.filter.GeoServerCompositeFilter$NestedFilterChain.doFilter(GeoServerCompositeFilter.java:68)
at org.springframework.security.web.authentication.AbstractAuthenticationProcessingFilter.doFilter(AbstractAuthenticationProcessingFilter.java:182)
at org.geoserver.security.filter.GeoServerCompositeFilter$NestedFilterChain.doFilter(GeoServerCompositeFilter.java:72)
at org.geoserver.security.filter.GeoServerCompositeFilter.doFilter(GeoServerCompositeFilter.java:91)
at org.geoserver.security.filter.GeoServerUserNamePasswordAuthenticationFilter.doFilter(GeoServerUserNamePasswordAuthenticationFilter.java:115)
at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:323)
at org.geoserver.security.filter.GeoServerCompositeFilter$NestedFilterChain.doFilter(GeoServerCompositeFilter.java:68)
at org.springframework.security.web.authentication.rememberme.RememberMeAuthenticationFilter.doFilter(RememberMeAuthenticationFilter.java:146)
at org.geoserver.security.filter.GeoServerCompositeFilter$NestedFilterChain.doFilter(GeoServerCompositeFilter.java:72)
at org.geoserver.security.filter.GeoServerCompositeFilter.doFilter(GeoServerCompositeFilter.java:91)
at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:323)
at org.geoserver.security.filter.GeoServerCompositeFilter$NestedFilterChain.doFilter(GeoServerCompositeFilter.java:68)
at org.springframework.security.web.context.SecurityContextPersistenceFilter.doFilter(SecurityContextPersistenceFilter.java:87)
at org.geoserver.security.filter.GeoServerSecurityContextPersistenceFilter$1.doFilter(GeoServerSecurityContextPersistenceFilter.java:52)
at org.geoserver.security.filter.GeoServerCompositeFilter$NestedFilterChain.doFilter(GeoServerCompositeFilter.java:72)
at org.geoserver.security.filter.GeoServerCompositeFilter.doFilter(GeoServerCompositeFilter.java:91)
at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:323)
at org.springframework.security.web.FilterChainProxy.doFilter(FilterChainProxy.java:173)
at org.geoserver.security.GeoServerSecurityFilterChainProxy.doFilter(GeoServerSecurityFilterChainProxy.java:134)
at org.springframework.web.filter.DelegatingFilterProxy.invokeDelegate(DelegatingFilterProxy.java:346)
at org.springframework.web.filter.DelegatingFilterProxy.doFilter(DelegatingFilterProxy.java:259)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:241)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208)
at org.geoserver.filters.LoggingFilter.doFilter(LoggingFilter.java:75)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:241)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208)
at org.geoserver.filters.GZIPFilter.doFilter(GZIPFilter.java:42)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:241)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208)
at org.geoserver.filters.SessionDebugFilter.doFilter(SessionDebugFilter.java:47)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:241)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208)
at org.geoserver.filters.FlushSafeFilter.doFilter(FlushSafeFilter.java:43)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:241)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208)
at org.vfny.geoserver.filters.SetCharacterEncodingFilter.doFilter(SetCharacterEncodingFilter.java:109)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:241)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208)
at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:220)
at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:122)
at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:501)
at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:171)
at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:103)
at org.apache.catalina.valves.AccessLogValve.invoke(AccessLogValve.java:950)
at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:116)
at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:408)
at org.apache.coyote.http11.AbstractHttp11Processor.process(AbstractHttp11Processor.java:1070)
at org.apache.coyote.AbstractProtocol$AbstractConnectionHandler.process(AbstractProtocol.java:611)
at org.apache.tomcat.util.net.JIoEndpoint$SocketProcessor.run(JIoEndpoint.java:314)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:61)
at java.lang.Thread.run(Thread.java:745)
Caused by: java.lang.IllegalArgumentException: The input argument(s) may not be null.
at javax.media.jai.PlanarImage.wrapRenderedImage(PlanarImage.java:576)
at org.geotools.coverage.io.netcdf.NetCDFResponse.prepareCoverage(NetCDFResponse.java:533)
at org.geotools.coverage.io.netcdf.NetCDFResponse.processRequest(NetCDFResponse.java:264)
at org.geotools.coverage.io.netcdf.NetCDFResponse.createResponse(NetCDFResponse.java:147)
at org.geotools.coverage.io.netcdf.NetCDFSource.read(NetCDFSource.java:65)
at org.geotools.coverage.io.netcdf.NetCDFReader.read(NetCDFReader.java:465)
at org.geoserver.catalog.SingleGridCoverage2DReader.read(SingleGridCoverage2DReader.java:140)
at org.geoserver.catalog.CatalogBuilder.buildCoverage(CatalogBuilder.java:967)
at org.geoserver.catalog.CatalogBuilder.buildCoverage(CatalogBuilder.java:855)
at org.geoserver.web.data.layer.NewLayerPage.buildLayerInfo(NewLayerPage.java:319)
... 108 more

Environment

None

Activity

Show:
codehaus
April 10, 2015, 4:30 PM

CodeHaus Comment From: bradh - Time: Sun, 15 Feb 2015 00:39:33 -0600
---------------------
<p>This still occurs with 2.7 (master from ares) today.</p>

<p>Just before the stacktrace, the logs contain</p>
<div class="preformatted panel" style="border-width: 1px;"><div class="preformattedContent panelContent">
<pre>2015-02-15 17:37:30,483 WARN [netcdf.NetCDFImageReader] - Unsupported axis: double lat(y=120, x=160);
:units = "degrees_north";
:long_name = "latitude coordinate";
:standard_name = "latitude";
:_CoordinateAxisType = "Lat";
in input: file:/var/lib/tomcat7/webapps/geoserver/data/file.nc has been found
2015-02-15 17:37:30,484 WARN [netcdf.NetCDFImageReader] - Unsupported axis: double lon(y=120, x=160);
:units = "degrees_east";
:long_name = "longitude coordinate";
:standard_name = "longitude";
:_CoordinateAxisType = "Lon";
in input: file:/var/lib/tomcat7/webapps/geoserver/data/file.nc has been found
2015-02-15 17:37:30,484 ERROR [netcdf.NetCDFImageReader] - Null coordinate variable: 'lat' while processing input: file:/var/lib/tomcat7/webapps/geoserver/data/file.nc
2015-02-15 17:37:30,484 ERROR [netcdf.NetCDFImageReader] - Null coordinate variable: 'lon' while processing input: file:/var/lib/tomcat7/webapps/geoserver/data/file.nc
2015-02-15 17:37:30,623 ERROR [wicket.RequestCycle] - Error occurred while building the resources for the configuration page
</pre>
</div></div>

Andrea Aime
March 5, 2016, 2:15 PM

Daniele, I'm wondering, is the file CF compliant? (if not, it might explain the issue, and we could close the ticket)

Assignee

Daniele Romagnoli

Reporter

codehaus

Triage

None

Fix versions

None

Affects versions

Components

Priority

Medium
Configure